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» Constraint Based Methods for Biological Sequence Analysis
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BMCBI
2008
114views more  BMCBI 2008»
15 years 4 months ago
TiGER: A database for tissue-specific gene expression and regulation
Background: Understanding how genes are expressed and regulated in different tissues is a fundamental and challenging question. However, most of currently available biological dat...
Xiong Liu, Xueping Yu, Donald J. Zack, Heng Zhu, J...
IJFCS
2008
98views more  IJFCS 2008»
15 years 4 months ago
On Succinct Representation of Knowledge Community Taxonomies with Formal Concept Analysis
We present an application of formal concept analysis aimed at representing a meaningful structure of knowledge communities in the form of a lattice-based taxonomy. The taxonomy gr...
Camille Roth, Sergei A. Obiedkov, Derrick G. Kouri...
ICASSP
2009
IEEE
15 years 11 months ago
Exploring functional connectivity in fMRI via clustering
In this paper we investigate the use of data driven clustering methods for functional connectivity analysis in fMRI. In particular, we consider the K-Means and Spectral Clustering...
Archana Venkataraman, Koene R. A. Van Dijk, Randy ...
RECOMB
1999
Springer
15 years 8 months ago
Fast detection of common geometric substructure in proteins
We consider the problem of identifying common three-dimensional substructures between proteins. Our method is based on comparing the shape of the α-carbon backbone structures of ...
L. Paul Chew, Daniel P. Huttenlocher, Klara Kedem,...
RECOMB
2008
Springer
16 years 4 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...