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» Constraint Based Methods for Biological Sequence Analysis
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BMCBI
2008
150views more  BMCBI 2008»
15 years 4 months ago
MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level
Background: The recent availability of complete sequences for numerous closely related bacterial genomes opens up new challenges in comparative genomics. Several methods have been...
Hélène Chiapello, Annie Gendrault, C...
BMCBI
2006
112views more  BMCBI 2006»
15 years 4 months ago
Protein disorder prediction by condensed PSSM considering propensity for order or disorder
Background: More and more disordered regions have been discovered in protein sequences, and many of them are found to be functionally significant. Previous studies reveal that dis...
Chung-Tsai Su, Chien-Yu Chen, Yu-Yen Ou
147
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BMCBI
2006
137views more  BMCBI 2006»
15 years 4 months ago
A classification-based framework for predicting and analyzing gene regulatory response
Background: We have recently introduced a predictive framework for studying gene transcriptional regulation in simpler organisms using a novel supervised learning algorithm called...
Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chr...
BMCBI
2010
178views more  BMCBI 2010»
15 years 4 months ago
Selecting high-dimensional mixed graphical models using minimal AIC or BIC forests
Background: Chow and Liu showed that the maximum likelihood tree for multivariate discrete distributions may be found using a maximum weight spanning tree algorithm, for example K...
David Edwards, Gabriel C. G. de Abreu, Rodrigo Lab...
143
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MODELS
2009
Springer
15 years 8 months ago
From UML to Alloy and Back Again
Abstract. Model Transformations can be used to bridge the gap between design and analysis technical spaces by creating tools that allow a model produced by a designer to be transfo...
Seyyed M. A. Shah, Kyriakos Anastasakis, Behzad Bo...