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» Constraint Based Methods for Biological Sequence Analysis
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130
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ICML
2009
IEEE
16 years 4 months ago
Structure learning with independent non-identically distributed data
There are well known algorithms for learning the structure of directed and undirected graphical models from data, but nearly all assume that the data consists of a single i.i.d. s...
Robert E. Tillman
129
Voted
BMCBI
2005
127views more  BMCBI 2005»
15 years 3 months ago
Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
Etienne Larsabal, Antoine Danchin
140
Voted
ICA
2007
Springer
15 years 5 months ago
Bayesian Estimation of Overcomplete Independent Feature Subspaces for Natural Images
In this paper, we propose a Bayesian estimation approach to extend independent subspace analysis (ISA) for an overcomplete representation without imposing the orthogonal constraint...
Libo Ma, Liqing Zhang
SIAMCOMP
2012
13 years 6 months ago
Randomized Competitive Algorithms for Generalized Caching
We consider online algorithms for the generalized caching problem. Here we are given a cache of size k and pages with arbitrary sizes and fetching costs. Given a request sequence ...
Nikhil Bansal, Niv Buchbinder, Joseph Naor
154
Voted
BMCBI
2006
126views more  BMCBI 2006»
15 years 3 months ago
A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data
Background: As a variety of functional genomic and proteomic techniques become available, there is an increasing need for functional analysis methodologies that integrate heteroge...
Zizhen Yao, Walter L. Ruzzo