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» Constraint Based Methods for Biological Sequence Analysis
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122
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ASM
2010
ASM
16 years 20 days ago
Lightweight Modeling of Java Virtual Machine Security Constraints
The Java programming language has been widely described as secure by design. Nevertheless, a number of serious security vulnerabilities have been discovered in Java, particularly i...
Mark C. Reynolds
138
Voted
BMCBI
2005
246views more  BMCBI 2005»
15 years 3 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
122
Voted
AAAI
2006
15 years 5 months ago
Unsupervised Order-Preserving Regression Kernel for Sequence Analysis
In this work, a generalized method for learning from sequence of unlabelled data points based on unsupervised order-preserving regression is proposed. Sequence learning is a funda...
Young-In Shin
129
Voted
BIBE
2007
IEEE
151views Bioinformatics» more  BIBE 2007»
15 years 5 months ago
On the Effectiveness of Constraints Sets in Clustering Genes
—In this paper, we have modified a constrained clustering algorithm to perform exploratory analysis on gene expression data using prior knowledge presented in the form of constr...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
152
Voted
JUCS
2010
130views more  JUCS 2010»
14 years 10 months ago
Toward an Integrated Tool Environment for Static Analysis of UML Class and Sequence Models
: There is a need for more rigorous analysis techniques that developers can use for verifying the critical properties in UML models. The UML-based Specification Environment (USE) t...
Wuliang Sun, Eunjee Song, Paul C. Grabow, Devon M....