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» Constraint Based Methods for Biological Sequence Analysis
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EOR
2008
72views more  EOR 2008»
13 years 7 months ago
The car sequencing problem: Overview of state-of-the-art methods and industrial case-study of the ROADEF'2005 challenge problem
The ROADEF challenge is organized every two years by the French Society of Operations Research and Decision-Making Aid. The goal is to allow industrial partners to witness recent ...
Christine Solnon, Van Dat Cung, Alain Nguyen, Chri...
BMCBI
2008
178views more  BMCBI 2008»
13 years 7 months ago
A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic ana
Background: Protein remote homology detection and fold recognition are central problems in bioinformatics. Currently, discriminative methods based on support vector machine (SVM) ...
Bin Liu, Xiaolong Wang, Lei Lin, Qiwen Dong, Xuan ...
AUSAI
2008
Springer
13 years 9 months ago
Propositionalisation of Profile Hidden Markov Models for Biological Sequence Analysis
Hidden Markov Models are a widely used generative model for analysing sequence data. A variant, Profile Hidden Markov Models are a special case used in Bioinformatics to represent,...
Stefan Mutter, Bernhard Pfahringer, Geoffrey Holme...
ENGL
2007
180views more  ENGL 2007»
13 years 7 months ago
Biological Data Mining for Genomic Clustering Using Unsupervised Neural Learning
— The paper aims at designing a scheme for automatic identification of a species from its genome sequence. A set of 64 three-tuple keywords is first generated using the four type...
Shreyas Sen, Seetharam Narasimhan, Amit Konar
IDEAS
1997
IEEE
237views Database» more  IDEAS 1997»
13 years 11 months ago
Sequence Comparison Using a Relational Database Approach
A variety of heterogenous data sources is available in the field of molecular biology. Our focus lies on the biological sequence data, i. e. data maintained in collections like EM...
André Bergholz, Stephan Heymann, Jörg ...