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» Constraint Based Methods for Biological Sequence Analysis
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133
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CSB
2005
IEEE
132views Bioinformatics» more  CSB 2005»
15 years 5 months ago
A Fast Shotgun Assembly Heuristic
Genome sequencing opened a new era in genetics allowing the study of genomes at the nucleotide level. However, the chosen method of sequencing produced large numbers of nucleotide...
Christopher Wilks, Sami Khuri
123
Voted
FORTE
1997
15 years 5 months ago
On-Line Timed Protocol Trace Analysis Based on Uncertain State Descriptions
This paper presents a new approach to the task of passive protocol tracing. The method called FollowSM for the first time meets all requirements of practical in-field use, inclu...
Marek Musial
170
Voted
SDM
2011
SIAM
232views Data Mining» more  SDM 2011»
14 years 6 months ago
A Sequential Dual Method for Structural SVMs
In many real world prediction problems the output is a structured object like a sequence or a tree or a graph. Such problems range from natural language processing to computationa...
Shirish Krishnaj Shevade, Balamurugan P., S. Sunda...
122
Voted
CSB
2004
IEEE
141views Bioinformatics» more  CSB 2004»
15 years 7 months ago
MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies
A new computational method to study within-host viral evolution is explored to better understand the evolution and pathogenesis of viruses. Traditional phylogenetic tree methods a...
Patricia Buendia, Giri Narasimhan
142
Voted
BMCBI
2011
14 years 7 months ago
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks
Background: Flux coupling analysis (FCA) is a useful method for finding dependencies between fluxes of a metabolic network at steady-state. FCA classifies reactions into subsets (...
László Dávid, Sayed-Amir Mara...