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CP
2005
Springer
14 years 3 months ago
Applying Constraint Programming to Rigid Body Protein Docking
In this paper we show how Constraint Programming (CP) techniques can improve the efficiency and applicability of grid-based algorithms for optimising surface contact between comple...
Ludwig Krippahl, Pedro Barahona
ISVC
2007
Springer
14 years 3 months ago
Integrative Geometric-Hashing Approaches to Binding Site Modeling and Ligand-Protein Interaction Prediction
Abstract. The function of a protein is dependent on whether and how it can interact with various ligands. Therefore, an accurate prediction of protein-ligand interactions is paramo...
Joanna Lipinski-Kruszka, Rahul Singh
ILP
1998
Springer
14 years 2 months ago
Application of Inductive Logic Programming to Discover Rules Governing the Three-Dimensional Topology of Protein Structure
Abstract. Inductive Logic Programming (ILP) has been applied to discover rules governing the three-dimensional topology of protein structure. The data-set unifies two sources of in...
Marcel Turcotte, Stephen Muggleton, Michael J. E. ...
WABI
2007
Springer
14 years 3 months ago
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking
Christopher James Langmead⋆ and Sumit Kumar Jha Department of Computer Science, Carnegie Mellon University We present a novel approach for predicting protein folding kinetics us...
Christopher James Langmead, Sumit Kumar Jha
GCB
1997
Springer
74views Biometrics» more  GCB 1997»
14 years 1 months ago
Using constraint programming for lattice protein folding
We present a global search technique for nding the global minimal conformation of a sequence in Dill's HP-lattice model5;6 . The HP-lattice model is a simpli ed model of prot...
Rolf Backofen