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» Constraint Programming in Structural Bioinformatics
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IPPS
2006
IEEE
14 years 3 months ago
An experimental study of optimizing bioinformatics applications
As bioinformatics is an emerging application of high performance computing, this paper first evaluates the memory performance of several representative bioinformatics application...
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Su...
SC
2009
ACM
14 years 2 months ago
Cloud technologies for bioinformatics applications
Executing large number of independent tasks or tasks that perform minimal inter-task communication in parallel is a common requirement in many domains. In this paper, we present o...
Xiaohong Qiu, Jaliya Ekanayake, Scott Beason, Thil...
BMCBI
2011
13 years 4 months ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
CP
2005
Springer
14 years 3 months ago
CP(Graph): Introducing a Graph Computation Domain in Constraint Programming
Abstract. In an increasing number of domains such as bioinformatics, combinatorial graph problems arise. We propose a novel way to solve these problems, mainly those that can be tr...
Grégoire Dooms, Yves Deville, Pierre Dupont