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NAR
2008
119views more  NAR 2008»
13 years 10 months ago
MALISAM: a database of structurally analogous motifs in proteins
MALISAM (manual alignments for structurally analogous motifs) represents the first database containing pairs of structural analogs and their alignments. To find reliable analogs, ...
Hua Cheng, Bong-Hyun Kim, Nick V. Grishin
OL
2008
79views more  OL 2008»
13 years 10 months ago
A simpler and tighter redundant Klee-Minty construction
By introducing redundant Klee-Minty examples, we have previously shown that the central path can be bent along the edges of the Klee-Minty cubes, thus having 2n - 2 sharp turns in...
Eissa Nematollahi, Tamás Terlaky
SIAMJO
2008
93views more  SIAMJO 2008»
13 years 9 months ago
Multivariable Utility Functions
Abstract. Utility functions of several variables are ubiquitous in economics. Their maximization requires inversion of the gradient map. Using convex analysis tools, we provide a r...
Maria B. Chiarolla, Ulrich G. Haussmann
SIAMSC
2008
182views more  SIAMSC 2008»
13 years 9 months ago
A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
We propose a distributed algorithm for solving Euclidean metric realization problems arising from large 3D graphs, using only noisy distance information, and without any prior kno...
Pratik Biswas, Kim-Chuan Toh, Yinyu Ye
SIAMSC
2008
139views more  SIAMSC 2008»
13 years 9 months ago
Probing the Pareto Frontier for Basis Pursuit Solutions
The basis pursuit problem seeks a minimum one-norm solution of an underdetermined least-squares problem. Basis pursuit denoise (BPDN) fits the least-squares problem only approximat...
Ewout van den Berg, Michael P. Friedlander