DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...
GENET is a heuristic repair algorithm which demonstrates impressive e ciency in solving some large-scale and hard instances of constraint satisfaction problems (CSPs). In this pap...
Kenneth M. F. Choi, Jimmy Ho-Man Lee, Peter J. Stu...
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
Monitoring is an issue of primary concern in current and next generation networked systems. For example, the objective of sensor networks is to monitor their surroundings for a va...
Ram Keralapura, Graham Cormode, Jeyashankher Ramam...
— One of the critical issues in search engines is the size of search indexes: as the number of documents handled by an engine increases, the search must preserve its efficiency,...