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» Constructing Incremental Sequences in Graphs
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ISMB
1997
13 years 10 months ago
Automated Alignment of RNA Sequences to Pseudoknotted Structures
Seq7 is a newprogramfor generating multiple structure-based alignments of RNAsequences. Byusing a variant of Dijkstra’s algorithm to find the shortest path through a specially c...
Jack E. Tabaska, Gary D. Stormo
SPIN
2009
Springer
14 years 3 months ago
Improving Non-Progress Cycle Checks
This paper introduces a new model checking algorithm that searches for non-progress cycles, used mainly to check for livelocks. The algorithm performs an incremental depth-first s...
David Faragó, Peter H. Schmitt
ISAAC
2004
Springer
153views Algorithms» more  ISAAC 2004»
14 years 2 months ago
Canonical Data Structure for Interval Probe Graphs
The class of interval probe graphs is introduced to deal with the physical mapping and sequencing of DNA as a generalization of interval graphs. The polynomial time recognition al...
Ryuhei Uehara
ISCIS
2009
Springer
14 years 3 months ago
Using a SAT solver to generate checking sequences
—Methods for software testing based on Finite State Machines (FSMs) have been researched since the early 60’s. Many of these methods are about generating a checking sequence fr...
Guy-Vincent Jourdan, Hasan Ural, Hüsnü Y...
SMA
2009
ACM
134views Solid Modeling» more  SMA 2009»
14 years 3 months ago
Exact Delaunay graph of smooth convex pseudo-circles: general predicates, and implementation for ellipses
We examine the problem of computing exactly the Delaunay graph (and the dual Voronoi diagram) of a set of, possibly intersecting, smooth convex pseudo-circles in the Euclidean pla...
Ioannis Z. Emiris, Elias P. Tsigaridas, George M. ...