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» Constructing Incremental Sequences in Graphs
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252views
13 years 11 months ago
Context models on sequences of covers
We present a class of models that, via a simple construction, enables exact, incremental, non-parametric, polynomial-time, Bayesian inference of conditional measures. The approac...
Christos Dimitrakakis
BMCBI
2008
96views more  BMCBI 2008»
13 years 8 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown
ESA
2004
Springer
95views Algorithms» more  ESA 2004»
14 years 2 months ago
On Dynamic Shortest Paths Problems
We obtain the following results related to dynamic versions of the shortest-paths problem: (i) Reductions that show that the incremental and decremental singlesource shortest-paths...
Liam Roditty, Uri Zwick
WG
2004
Springer
14 years 2 months ago
Minimal de Bruijn Sequence in a Language with Forbidden Substrings
Let be the following strategy to construct a walk in a labeled digraph: at each vertex, we follow the unvisited arc of minimum label. In this work we study for which languages, app...
Eduardo Moreno, Martín Matamala
PPSN
2004
Springer
14 years 2 months ago
An Evolutionary Algorithm for the Maximum Weight Trace Formulation of the Multiple Sequence Alignment Problem
Abstract. The multiple sequence alignment problem (MSA) can be reformulated as the problem of finding a maximum weight trace in an alignment graph, which is derived from all pairw...
Gabriele Koller, Günther R. Raidl