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CORR
2008
Springer
116views Education» more  CORR 2008»
15 years 2 months ago
Binding bigraphs as symmetric monoidal closed theories
Milner's bigraphs [1] are a general framework for reasoning about distributed and concurrent programming languages. Notably, it has been designed to encompass both the -calcul...
Tom Hirschowitz, Aurélien Pardon
EM
2010
155views Management» more  EM 2010»
15 years 2 months ago
Hyperbolic Graphs of Small Complexity
In this paper we enumerate and classify the "simplest" pairs (M, G) where M is a closed orientable 3-manifold and G is a trivalent graph embedded in M. To enumerate the p...
Damian Heard, Craig Hodgson, Bruno Martelli, Carlo...
119
Voted
BMCBI
2006
118views more  BMCBI 2006»
15 years 2 months ago
Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration
Background: There is an ever increasing rate of data made available on genetic variation, transcriptomes and proteomes. Similarly, a growing variety of bioinformatic programs are ...
Erdahl T. Teber, Edward Crawford, Kent B. Bolton, ...
140
Voted
BMCBI
2006
105views more  BMCBI 2006»
15 years 2 months ago
CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks
Background: One-dimensional protein structures such as secondary structures or contact numbers are useful for three-dimensional structure prediction and helpful for intuitive unde...
Akira R. Kinjo, Ken Nishikawa
127
Voted
BMCBI
2006
111views more  BMCBI 2006»
15 years 2 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...