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» Context Dependent Analysis of BioAmbients
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BMCBI
2010
136views more  BMCBI 2010»
13 years 7 months ago
Bias correction and Bayesian analysis of aggregate counts in SAGE libraries
Background: Tag-based techniques, such as SAGE, are commonly used to sample the mRNA pool of an organism's transcriptome. Incomplete digestion during the tag formation proces...
Russell L. Zaretzki, Michael A. Gilchrist, William...
BMCBI
2005
122views more  BMCBI 2005»
13 years 7 months ago
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein
Background: Recognition codes for protein-DNA interactions typically assume that the interacting positions contribute additively to the binding energy. While this is known to not ...
Jiajian Liu, Gary D. Stormo
WCRE
2009
IEEE
14 years 2 months ago
SQUAD: Software Quality Understanding through the Analysis of Design
—Object-oriented software quality models usually use metrics of classes and of relationships among classes to assess the quality of systems. However, software quality does not de...
Foutse Khomh
ENTCS
2010
110views more  ENTCS 2010»
13 years 7 months ago
Modelling Interactive Experience, Function and Performance in Ubiquitous Systems
The cost of deploying a ubiquitous system to enhance a physical environment is likely to be considerable. The success of its deployment is highly dependent on its context: the phy...
Michael D. Harrison, Mieke Massink
EMNLP
2009
13 years 5 months ago
Recognizing Implicit Discourse Relations in the Penn Discourse Treebank
We present an implicit discourse relation classifier in the Penn Discourse Treebank (PDTB). Our classifier considers the context of the two arguments, word pair information, as we...
Ziheng Lin, Min-Yen Kan, Hwee Tou Ng