309 search results - page 14 / 62 » Contextual alignment of biological sequences |
RECOMB
1997
Springer
13 years 11 months ago
1997
Springer
We present a new polynomial time approximation scheme (PTAS) for tree alignment, which is an important variant of multiple sequence alignment. As in the existing PTASs in the liter...
CISIS
2010
IEEE
14 years 29 days ago
2010
IEEE
—A new parallel programming framework for DNA sequence alignment in homogeneous multi-core processor architectures is proposed. Contrasting with traditional coarse-grained parall...
CONSTRAINTS
2008
13 years 7 months ago
2008
Aligning DNA and protein sequences is a core technique in molecular biology. Often, it is desirable to include partial prior knowledge and conditions in an alignment. Going beyond...
BIBE
2005
IEEE
14 years 1 months ago
2005
IEEE
We propose two novel dynamic programming (DP) methods that solve the the approximate bounded and unbounded global alignment problems for biological sequences. Our first method so...
CSB
2005
IEEE
14 years 1 months ago
2005
IEEE
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...