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» Contextual alignment of biological sequences
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BMCBI
2011
13 years 2 months ago
R2R - software to speed the depiction of aesthetic consensus RNA secondary structures
Background: With continuing identification of novel structured noncoding RNAs, there is an increasing need to create schematic diagrams showing the consensus features of these mol...
Zasha Weinberg, Ronald R. Breaker
BMCBI
2008
142views more  BMCBI 2008»
13 years 7 months ago
Strategies for measuring evolutionary conservation of RNA secondary structures
Background: Evolutionary conservation of RNA secondary structure is a typical feature of many functional non-coding RNAs. Since almost all of the available methods used for predic...
Andreas R. Gruber, Stephan H. F. Bernhart, Ivo L. ...
GECCO
1999
Springer
13 years 12 months ago
Reaction Temperature Constraints in DNA Computing
Using the thermodynamics of DNA melting, a technique is proposed to choose a reaction temperature for the DNA computation that minimizes the potential for mishybridizations. Adlem...
Russell J. Deaton
MICCAI
2007
Springer
14 years 8 months ago
A Bayesian 3D Volume Reconstruction for Confocal Micro-rotation Cell Imaging
Abstract. Recently, micro-rotation confocal microscopy has enabled the acquisition of a sequence of slices for a non-adherent living cells where the slices' positions are roug...
Alain Trouvé, Bernard Chalmond, Yong Yu
ECML
2006
Springer
13 years 11 months ago
PAC-Learning of Markov Models with Hidden State
The standard approach for learning Markov Models with Hidden State uses the Expectation-Maximization framework. While this approach had a significant impact on several practical ap...
Ricard Gavaldà, Philipp W. Keller, Joelle P...