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HIPC
2009
Springer
13 years 5 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...
IPPS
2006
IEEE
14 years 1 months ago
A look at application performance sensitivity to the bandwidth and latency of InfiniBand networks
This work explores the expected performance of three applications on a High Performance Computing cluster interconnected using Infiniband. In particular, the expected performance ...
Darren J. Kerbyson
IPPS
1998
IEEE
13 years 12 months ago
BIP: A New Protocol Designed for High Performance Networking on Myrinet
Abstract. High speed networks are now providing incredible performances. Software evolution is slow and the old protocol stacks are no longer adequate for these kind of communicati...
Loïc Prylli, Bernard Tourancheau
IPPS
2008
IEEE
14 years 2 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
IPPS
2005
IEEE
14 years 1 months ago
QoS Aware Job Scheduling in a Cluster-Based Web Server for Multimedia Applications
We propose a cluster-based web server where a few computing nodes are separately reserved for high-performance computing applications, such as multimedia, SSL, and CGI. As an exam...
Jiani Guo, Laxmi N. Bhuyan, Raj Kumar, Sujoy Basu