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    BMCBI
    2007
    181views more  BMCBI 2007»
    Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
    13 years 8 months ago
    Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
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    Background: In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from lo...
    Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan
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    BMCBI
    2008
    127views more  BMCBI 2008»
    Gene and pathway identification with Lp penalized Bayesian logistic regression
    13 years 8 months ago
    Gene and pathway identification with Lp penalized Bayesian logistic regression
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    Background: Identifying genes and pathways associated with diseases such as cancer has been a subject of considerable research in recent years in the area of bioinformatics and co...
    Zhenqiu Liu, Ronald B. Gartenhaus, Ming Tan, Feng ...
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    BMCBI
    2007
    146views more  BMCBI 2007»
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    13 years 8 months ago
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
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    Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
    Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
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    BMCBI
    2010
    135views more  BMCBI 2010»
    A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis
    13 years 8 months ago
    A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis
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    Background: Accurate classification into genotypes is critical in understanding evolution of divergent viruses. Here we report a new approach, MuLDAS, which classifies a query seq...
    Ji Woong Kim, Yongju Ahn, Kichan Lee, Sung-Hee Par...
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    BMCBI
    2010
    125views more  BMCBI 2010»
    Visualisation tool for peptide fractionation data in proteomics: application to OFFGEL isoelectric focussing
    13 years 8 months ago
    Visualisation tool for peptide fractionation data in proteomics: application to OFFGEL isoelectric focussing
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    Background: OFFGEL isoelectric focussing (IEF) has become a popular tool in proteomics to fractionate peptides or proteins. As a consequence there is a need for software solutions...
    David-Olivier D. Azulay, Hendrik Neubert, Mireia F...
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