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    » DNA Computing Based on Splicing: Universality Results
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    BMCBI
    2005
    246views more  BMCBI 2005»
    ParPEST: a pipeline for EST data analysis based on parallel computing
    13 years 7 months ago
    ParPEST: a pipeline for EST data analysis based on parallel computing
    Download  www.biomedcentral.com
    Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
    Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
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    CIBCB
    2007
    IEEE
    144views Computational Biology» more  CIBCB 2007»
    Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
    14 years 2 months ago
    Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
    Download  crewman.uta.edu
    Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
    Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
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    BMCBI
    2007
    247views more  BMCBI 2007»
    A survey of DNA motif finding algorithms
    13 years 7 months ago
    A survey of DNA motif finding algorithms
    Download  www.biomedcentral.com
    Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
    Modan K. Das, Ho-Kwok Dai
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    BMCBI
    2006
    136views more  BMCBI 2006»
    Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression
    13 years 7 months ago
    Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression
    Download  www.biomedcentral.com
    Background: The recent advancement of microarray technology with lower noise and better affordability makes it possible to determine expression of several thousand genes simultane...
    Raja Loganantharaj, Satish Cheepala, John Clifford
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    RECOMB
    2002
    Springer
    128views Computational Biology» more  RECOMB 2002»
    DNA sequence evolution with neighbor-dependent mutation
    14 years 8 months ago
    DNA sequence evolution with neighbor-dependent mutation
    Download  matisse.ucsd.edu
    We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
    Peter F. Arndt, Christopher B. Burge, Terence Hwa
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