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» DNA Computing Based on Splicing: Universality Results
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ISMB
1998
13 years 9 months ago
Advanced Query Mechanisms for Biological Databases
Existing query interfaces for biological databases are either based on fixed forms or textual query languages. Users of a fixed form-based query interface are limited to performin...
I-Min A. Chen, Anthony Kosky, Victor M. Markowitz,...
BMCBI
2005
127views more  BMCBI 2005»
13 years 7 months ago
Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
Etienne Larsabal, Antoine Danchin
CIBCB
2006
IEEE
13 years 11 months ago
Efficient Probe Selection in Microarray Design
Abstract-- The DNA microarray technology, originally developed to measure the level of gene expression, had become one of the most widely used tools in genomic study. Microarrays h...
Leszek Gasieniec, Cindy Y. Li, Paul Sant, Prudence...
STOC
2006
ACM
130views Algorithms» more  STOC 2006»
14 years 8 months ago
On the fourier tails of bounded functions over the discrete cube
In this paper we consider bounded real-valued functions over the discrete cube, f : {-1, 1}n [-1, 1]. Such functions arise naturally in theoretical computer science, combinatorics...
Irit Dinur, Ehud Friedgut, Guy Kindler, Ryan O'Don...
SODA
2003
ACM
142views Algorithms» more  SODA 2003»
13 years 9 months ago
The similarity metric
—A new class of distances appropriate for measuring similarity relations between sequences, say one type of similarity per distance, is studied. We propose a new “normalized in...
Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vit&...