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» DNA Computing Based on Splicing: Universality Results
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BMCBI
2010
90views more  BMCBI 2010»
13 years 7 months ago
Local alignment of generalized k-base encoded DNA sequence
Background: DNA sequence comparison is a well-studied problem, in which two DNA sequences are compared using a weighted edit distance. Recent DNA sequencing technologies however o...
Nils Homer, Stanley F. Nelson, Barry Merriman
BMCBI
2010
99views more  BMCBI 2010»
13 years 7 months ago
Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays
Background: Alternative splicing is an important mechanism that increases protein diversity and functionality in higher eukaryotes. Affymetrix exon arrays are a commercialized pla...
Yi Qu, Fei He, Yuchen Chen
DNA
2004
Springer
168views Bioinformatics» more  DNA 2004»
14 years 1 months ago
Biomolecular Implementation of Computing Devices with Unbounded Memory
We propose a new way to implement (general) computing devices with unbounded memory. In particular, we show a procedure to implement automata with unbounded stack memory, push-down...
Matteo Cavaliere, Natasa Jonoska, Sivan Yogev, Ron...
IPPS
2006
IEEE
14 years 1 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
ICNC
2005
Springer
14 years 1 months ago
DNA Computing for Complex Scheduling Problem
Interest in DNA computing has increased overwhelmly since Adleman successfully demonstrated its capability to solve Hamiltonian Path Problem (HPP). Many research results of similar...
Mohd Saufee Muhammad, Zuwairie Ibrahim, Satomi Ued...