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» DNA Computing in Microreactors
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ISMB
1996
13 years 9 months ago
A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA
David Kulp, David Haussler, Martin G. Reese, Frank...
SODA
2000
ACM
106views Algorithms» more  SODA 2000»
13 years 9 months ago
Algorithms for optimizing production DNA sequencing
We discuss the problem of optimally "finishing" a partially sequenced, reconstructed DNA segment. At first sight, this appears to be computationally hard. We construct a...
Éva Czabarka, Goran Konjevod, Madhav V. Mar...
BMCBI
2011
12 years 11 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
DNA
2008
Springer
121views Bioinformatics» more  DNA 2008»
13 years 9 months ago
Isothermal Reactivating Whiplash PCR for Locally Programmable Molecular Computation
Whiplash PCR (WPCR), due to Hagiya et al. [1], is a novel technique for autonomous molecular computation where a state machine is implemented with a single stranded DNA molecule a...
John H. Reif, Urmi Majumder
DNA
2004
Springer
146views Bioinformatics» more  DNA 2004»
14 years 1 months ago
Partial Words for DNA Coding
A very basic problem in all DNA computations is finding a good encoding. Apart from the fact that they must provide a solution, the strands involved should not exhibit any undesir...
Peter Leupold