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IJFCS
2007
111views more  IJFCS 2007»
13 years 8 months ago
Involutively Bordered Words
In this paper we study a generalization of the classical notions of bordered and unbordered words, motivated by DNA computing. DNA strands can be viewed as finite strings over th...
Lila Kari, Kalpana Mahalingam
BMCBI
2005
201views more  BMCBI 2005»
13 years 8 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
UPP
2004
Springer
14 years 1 months ago
Bio-inspired Computing Paradigms (Natural Computing)
Abstract. This is just a glimpse to the fruitful and constant preoccupation of computer science to try to get inspired by biology, at various levels. Besides briefly discussing th...
Gheorghe Paun
ALGORITHMICA
2010
107views more  ALGORITHMICA 2010»
13 years 8 months ago
Capabilities and Limits of Compact Error Resilience Methods for Algorithmic Self-Assembly
Abstract Winfree's pioneering work led the foundations in the area of errorreduction in algorithmic self-assembly (Winfree and Bekbolatov in DNA Based Computers 9, LNCS, vol. ...
Sudheer Sahu, John H. Reif
ICASSP
2008
IEEE
14 years 2 months ago
Modeling regulatory sites with higher order position-dependent weight matrices
Identification of regulatory signals in DNA depends on the nature and quality of the patterns of representative sequences. These patterns are constructed from training sets of se...
Hossein Zare, Mostafa Kaveh, Arkady B. Khodursky