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JCC
2008
84views more  JCC 2008»
13 years 8 months ago
Explicit ion, implicit water solvation for molecular dynamics of nucleic acids and highly charged molecules
: An explicit ion, implicit water solvent model for molecular dynamics was developed and tested with DNA and RNA simulations. The implicit water model uses the finite difference Po...
Ninad V. Prabhu, Manoranjan Panda, Qingyi Yang, Ki...
ECEASST
2010
13 years 5 months ago
Self Organized Swarms for cluster preserving Projections of high-dimensional Data
: A new approach for topographic mapping, called Swarm-Organized Projection (SOP) is presented. SOP has been inspired by swarm intelligence methods for clustering and is similar to...
Alfred Ultsch, Lutz Herrmann
SOFSEM
2012
Springer
12 years 3 months ago
Iterated Hairpin Completions of Non-crossing Words
Abstract. Iterated hairpin completion is an operation on formal languages that is inspired by the hairpin formation in DNA biochemistry. Iterated hairpin completion of a word (or m...
Lila Kari, Steffen Kopecki, Shinnosuke Seki
BMCBI
2008
111views more  BMCBI 2008»
13 years 8 months ago
GENOMEPOP: A program to simulate genomes in populations
Background: There are several situations in population biology research where simulating DNA sequences is useful. Simulation of biological populations under different evolutionary...
Antonio Carvajal-Rodríguez
ICCS
2009
Springer
14 years 2 months ago
A Massively Parallel Architecture for Bioinformatics
Abstract. Today’s general purpose computers lack in meeting the requirements on computing performance for standard applications in bioinformatics like DNA sequence alignment, err...
Gerd Pfeiffer, Stefan Baumgart, Jan Schröder,...