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BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
13 years 7 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...
KDD
2002
ACM
125views Data Mining» more  KDD 2002»
14 years 8 months ago
Pattern discovery in sequences under a Markov assumption
In this paper we investigate the general problem of discovering recurrent patterns that are embedded in categorical sequences. An important real-world problem of this nature is mo...
Darya Chudova, Padhraic Smyth
SIGMOD
2005
ACM
144views Database» more  SIGMOD 2005»
14 years 8 months ago
Mining Periodic Patterns with Gap Requirement from Sequences
We study a problem of mining frequently occurring periodic patterns with a gap requirement from sequences. Given a character sequence S of length L and a pattern P of length l, we...
Minghua Zhang, Ben Kao, David Wai-Lok Cheung, Kevi...
BIBE
2007
IEEE
125views Bioinformatics» more  BIBE 2007»
14 years 2 months ago
Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing
Alternative splicing is a highly important process in many eukaryotic organisms, but surprisingly little is known about its regulation. Often, this process involves cis-regulatory ...
Sihui Zhao, Jihye Kim, Steffen Heber
CIBCB
2007
IEEE
14 years 2 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...