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JCC
2008
138views more  JCC 2008»
13 years 10 months ago
Circular dichroism enhancement in large DNA aggregates simulated by a generalized oscillator model
Abstract: An increased circular dichroism (CD) signal of large molecular aggregates formed upon DNA condensation was observed a long time ago, and is often referred to as w-CD. The...
Valery Andrushchenko, Petr Bour
CIBCB
2007
IEEE
14 years 4 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
DNA
2007
Springer
159views Bioinformatics» more  DNA 2007»
14 years 4 months ago
Activatable Tiles: Compact, Robust Programmable Assembly and Other Applications
While algorithmic DNA self-assembly is, in theory, capable of forming complex patterns, its experimental demonstration has been limited by significant assembly errors. In this pa...
Urmi Majumder, Thomas H. LaBean, John H. Reif
ALGORITHMICA
2010
107views more  ALGORITHMICA 2010»
13 years 10 months ago
Capabilities and Limits of Compact Error Resilience Methods for Algorithmic Self-Assembly
Abstract Winfree's pioneering work led the foundations in the area of errorreduction in algorithmic self-assembly (Winfree and Bekbolatov in DNA Based Computers 9, LNCS, vol. ...
Sudheer Sahu, John H. Reif
CSB
2003
IEEE
113views Bioinformatics» more  CSB 2003»
14 years 3 months ago
An Optimal DNA Segmentation Based on the MDL Principle
: The biological world is highly stochastic and inhomogeneous in its behaviour. There are regions in DNA with high concentration of G or C bases; stretches of sequences with an abu...
Wojciech Szpankowski, Wenhui Ren, Lukasz Szpankows...