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BMCBI
2004
96views more  BMCBI 2004»
13 years 10 months ago
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides
Background: Computer programs for the generation of multiple sequence alignments such as "Clustal W" allow detection of regions that are most conserved among many sequen...
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemt...
BMCBI
2004
97views more  BMCBI 2004»
13 years 10 months ago
Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage pattern
Background: Oligonucleotide frequencies were shown to be conserved signatures for bacterial genomes, however, the underlying constraints have yet not been resolved in detail. In t...
Oleg N. Reva, Burkhard Tümmler
IPPS
2007
IEEE
14 years 4 months ago
Implementing and Evaluating Automatic Checkpointing
As the size and popularity of computer clusters go on growing, fault tolerance is becoming a crucial factor to ensure high performance and reliability for applications. To provide...
Antonio S. Martins, Ronaldo Augusto Lara Gon&ccedi...
BIOCOMP
2008
13 years 11 months ago
Bioinformatics Tools: Searching for Markers in DNA/RNA Sequences
Research in bioinformatics and computational biology relies heavily on algorithms that facilitate the understanding of biological processes through the application of statistical ...
Kuha Mahalingam, Omar Bagasra
RECOMB
2001
Springer
14 years 10 months ago
Fast recovery of evolutionary trees with thousands of nodes
We present a novel distance-based algorithm for evolutionary tree reconstruction. Our algorithm reconstructs the topology of a tree with n leaves in O(n2 ) time using O(n) working...
Miklós Csürös