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ICPP
2003
IEEE
14 years 1 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
IPPS
2002
IEEE
14 years 19 days ago
Parallel EST Clustering
Expressed sequence tags, abbreviated ESTs, are DNA fragments experimentally derived from expressed portions of genes. Clustering of ESTs is essential for gene recognition and unde...
Anantharaman Kalyanaraman, Srinivas Aluru, Suresh ...
IPPS
2002
IEEE
14 years 19 days ago
Approximate String Matching in LDAP Based on Edit Distance
As the E-Commerce rapidly grows up, searching data is almost necessary in every application. Approximate string matching problems play a very important role to search with errors....
Chi-Chien Pan, Kai-Hsiang Yang, Tzao-Lin Lee
EMMCVPR
2001
Springer
14 years 6 days ago
Designing the Minimal Structure of Hidden Markov Model by Bisimulation
Hidden Markov Models (HMMs) are an useful and widely utilized approach to the modeling of data sequences. One of the problems related to this technique is finding the optimal stru...
Manuele Bicego, Agostino Dovier, Vittorio Murino
SC
2000
ACM
14 years 2 days ago
Parallel Phylogenetic Inference
Recent advances in DNA sequencing technology have created large data sets upon which phylogenetic inference can be performed. However, current research is limited by the prohibiti...
Quinn Snell, Michael Whiting, Mark J. Clement, Dav...