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» DNA Sequence Compression Using the Burrows-Wheeler Transform
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ISMB
1996
13 years 8 months ago
Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications
Virtually all large-scale sequencing projects use automatic sequence-assembly programs to aid in the determination of DNA sequences. The computer-generated assemblies require subs...
Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Sha...
PKDD
2007
Springer
87views Data Mining» more  PKDD 2007»
14 years 1 months ago
Visual Exploration of Genomic Data
Abstract. In this study, we present methods for comparative visualization of DNA sequences in two dimensions. First, we illustrate a transformation of gene sequences into numerical...
Michail Vlachos, Bahar Taneri, Eamonn J. Keogh, Ph...
BIBM
2008
IEEE
159views Bioinformatics» more  BIBM 2008»
14 years 1 months ago
Probe Design for Compressive Sensing DNA Microarrays
Abstract—Compressive Sensing Microarrays (CSM) are DNAbased sensors that operate using group testing and compressive sensing (CS) principles. In contrast to conventional DNA micr...
Wei Dai, Olgica Milenkovic, Mona A. Sheikh, Richar...
DCC
2007
IEEE
14 years 7 months ago
A Simple Statistical Algorithm for Biological Sequence Compression
This paper introduces a novel algorithm for biological sequence compression that makes use of both statistical properties and repetition within sequences. A panel of experts is ma...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison, Chris ...
BMCBI
2010
121views more  BMCBI 2010»
13 years 4 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...