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» DNA Sequence Compression Using the Burrows-Wheeler Transform
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BMCBI
2004
77views more  BMCBI 2004»
13 years 7 months ago
Graphical technique for identifying a monotonic variance stabilizing transformation for absolute gene intensity signals
Background: The usefulness of log2 transformation for cDNA microarray data has led to its widespread application to Affymetrix data. For Affymetrix data, where absolute intensitie...
Kellie J. Archer, Catherine I. Dumur, Viswanathan ...
BMCBI
2008
117views more  BMCBI 2008»
13 years 7 months ago
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
Background: With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is neede...
Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, ...
ISMB
1993
13 years 8 months ago
Discovering Sequence Similarity by the Algorithmic Significance Method
The minimal-length encoding approach is applied to define concept of sequence similarity. Asequence is defined to be similar to another sequence or to a set of keywords if it can ...
Aleksandar Milosavljevic
ISAMI
2010
13 years 5 months ago
Employing Compact Intra-genomic Language Models to Predict Genomic Sequences and Characterize Their Entropy
Probabilistic models of languages are fundamental to understand and learn the profile of the subjacent code in order to estimate its entropy, enabling the verification and predicti...
Sérgio A. D. Deusdado, Paulo Carvalho
DCC
2008
IEEE
14 years 7 months ago
A New Object-Based System for Fractal Video Sequences Compression
A novel object-based fractal monocular and stereo video compression scheme with quadtree-based motion and disparity compensation is proposed in this paper. Fractal coding is adopte...
Kamel Belloulata, Shiping Zhu