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» DNA Sequence Design Using Templates
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IPPS
2007
IEEE
14 years 1 months ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
BIBM
2008
IEEE
159views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Probe Design for Compressive Sensing DNA Microarrays
Abstract—Compressive Sensing Microarrays (CSM) are DNAbased sensors that operate using group testing and compressive sensing (CS) principles. In contrast to conventional DNA micr...
Wei Dai, Olgica Milenkovic, Mona A. Sheikh, Richar...
COMPSAC
1999
IEEE
13 years 12 months ago
Testing Extensible Design Patterns in Object-Oriented Frameworks through Scenario Templates
Design patterns have been used in object-oriented frameworks such as the IBM San Francisco framework, Apple's Rhaspody, OpenStep, and WebObjects, and DIWB. However, few guide...
Wei-Tek Tsai, Yongzhong Tu, Weiguang Shao, Ezra Eb...
CORR
2008
Springer
128views Education» more  CORR 2008»
13 years 7 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov
BMCBI
2011
12 years 11 months ago
LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures
Background: We developed an extendable open-source Loop-mediated isothermal AMPlification (LAMP) signature design program called LAVA (LAMP Assay Versatile Analysis). LAVA was cre...
Clinton Torres, Elizabeth A. Vitalis, Brian R. Bak...