26 search results - page 1 / 6 » DSIM: A Distance-Based Indexing Method for Genomic Sequences |
BIBE
2005
IEEE
14 years 13 days ago
2005
IEEE
In this paper, we propose a Distance-based Sequence Indexing Method (DSIM) for indexing and searching genome databases. Borrowing the idea of video compression, we compress the ge...
BIOCOMP
2006
13 years 8 months ago
2006
Indexing and retrieval techniques for homology searching of genomic databases are increasingly important as the search tools are facing great challenges of rapid growth in sequence...
BMCBI
2006
13 years 6 months ago
2006
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
BMCBI
2006
13 years 6 months ago
2006
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
BMCBI
2010
13 years 7 months ago
2010
Emerging knowledge of whole prokaryotic transcriptomes could validate a number of theoretical concepts introduced in the early days of genomics. What are the rules connecting gene...