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BMCBI
2005
132views more  BMCBI 2005»
13 years 7 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
BMCBI
2005
169views more  BMCBI 2005»
13 years 7 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
ENTCS
2002
166views more  ENTCS 2002»
13 years 7 months ago
Translation and Run-Time Validation of Optimized Code
The paper presents approaches to the validation of optimizing compilers. The emphasis is on aggressive and architecture-targeted optimizations which try to obtain the highest perf...
Lenore D. Zuck, Amir Pnueli, Yi Fang, Benjamin Gol...
SIGIR
2002
ACM
13 years 7 months ago
Two-stage language models for information retrieval
The optimal settings of retrieval parameters often depend on both the document collection and the query, and are usually found through empirical tuning. In this paper, we propose ...
ChengXiang Zhai, John D. Lafferty
IPPS
2010
IEEE
13 years 5 months ago
On the parallelisation of MCMC-based image processing
Abstract--The increasing availability of multi-core and multiprocessor architectures provides new opportunities for improving the performance of many computer simulations. Markov C...
Jonathan M. R. Byrd, Stephen A. Jarvis, Abhir H. B...