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» Data Management for High-Throughput Genomics
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BMCBI
2011
13 years 2 months ago
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects
Background: High-throughput re-sequencing, new genotyping technologies and the availability of reference genomes allow the extensive characterization of Single Nucleotide Polymorp...
Alexis Dereeper, Stéphane Nicolas, Loic Le ...
ICWS
2010
IEEE
13 years 6 months ago
jGASW: A Service-Oriented Framework Supporting HTC and Non-functional Concerns
—Although Service-Oriented principles have been widely adopted by High Throughput Computing infrastructure designers, the integration between SOA and HTC is made difficult by le...
Javier Rojas Balderrama, Johan Montagnat, Diane Li...
CIKM
1994
Springer
13 years 11 months ago
Facilitating Transformations in a Human Genome Project Database
Human Genome Project databases present a confluence of interesting database challenges: rapid schema and data evolution, complex data entry and constraint management, and the need...
Susan B. Davidson, Anthony Kosky, Barbara A. Eckma...
IPPS
2010
IEEE
13 years 5 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
BMCBI
2010
139views more  BMCBI 2010»
13 years 7 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...