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BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
DEBU
2010
113views more  DEBU 2010»
13 years 5 months ago
Storage Class Memory Aware Data Management
Storage Class Memory (SCM) is here to stay. It has characteristics that place it in a class apart both from main memory and hard disk drives. Software and systems, architectures a...
Bishwaranjan Bhattacharjee, Mustafa Canim, Christi...
CORR
2010
Springer
320views Education» more  CORR 2010»
13 years 8 months ago
An algorithm for the principal component analysis of large data sets
Recently popularized randomized methods for principal component analysis (PCA) efficiently and reliably produce nearly optimal accuracy -- even on parallel processors -- unlike the...
Nathan Halko, Per-Gunnar Martinsson, Yoel Shkolnis...
CCGRID
2003
IEEE
14 years 1 months ago
Building a Performance Model of Streaming Media Applications in Utility Data Center Environment
Abstract Utility Data Center (UDC) provides a exible, coste ective infrastructure to support the hosting of applications for Internet services. In order to enable the design of a \...
Ludmila Cherkasova, Loren Staley
CCGRID
2003
IEEE
13 years 11 months ago
Improving Access to Multi-dimensional Self-describing Scientific Dataset
Applications that query into very large multidimensional datasets are becoming more common. Many self-describing scientific data file formats have also emerged, which have structu...
Beomseok Nam, Alan Sussman