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BMCBI
2010
121views more  BMCBI 2010»
13 years 5 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
BMCBI
2011
12 years 11 months ago
CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
Background: The implementation of high throughput sequencing for exploring biodiversity poses high demands on bioinformatics applications for automated data processing. Here we in...
Surendra Kumar, Tor Carlsen, Bjørn-Helge Me...
COOPIS
2002
IEEE
14 years 16 days ago
PROLOG/RDBMS Integration in the NED Intelligent Information System
Abstract. The following paper describes recent work on NED-2, an intelligent information system for ecosystem management currently in development by the USDA Forest Service. Using ...
Frederick Maier, Donald Nute, Walter D. Potter, Ji...
ICDE
2009
IEEE
194views Database» more  ICDE 2009»
14 years 9 months ago
Effective XML Keyword Search with Relevance Oriented Ranking
Abstract-- Inspired by the great success of information retrieval (IR) style keyword search on the web, keyword search on XML has emerged recently. The difference between text data...
Zhifeng Bao, Tok Wang Ling, Bo Chen, Jiaheng Lu
SIGMOD
2009
ACM
155views Database» more  SIGMOD 2009»
14 years 7 months ago
Efficient top-k algorithms for fuzzy search in string collections
An approximate search query on a collection of strings finds those strings in the collection that are similar to a given query string, where similarity is defined using a given si...
Rares Vernica, Chen Li