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» Data dependence analysis for array references
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BMCBI
2004
131views more  BMCBI 2004»
13 years 6 months ago
Alternative mapping of probes to genes for Affymetrix chips
Background: Short oligonucleotide arrays have several probes measuring the expression level of each target transcript. Therefore the selection of probes is a key component for the...
Laurent Gautier, Morten Møller, Lennart Fri...
DASFAA
2008
IEEE
190views Database» more  DASFAA 2008»
14 years 1 months ago
Analysis of Time Series Using Compact Model-Based Descriptions
Abstract. Recently, we have proposed a novel method for the compression of time series based on mathematical models that explore dependencies between different time series. This r...
Hans-Peter Kriegel, Peer Kröger, Alexey Pryak...
BMCBI
2010
108views more  BMCBI 2010»
13 years 1 months ago
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Background: Concomitant with the rise in the popularity of DNA microarrays has been a surge of proposed methods for the analysis of microarray data. Fully controlled "spike-i...
Qianqian Zhu, Jeffrey C. Miecznikowski, Marc S. Ha...
BMCBI
2008
110views more  BMCBI 2008»
13 years 6 months ago
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands
Background: Hypermethylation of promoter CpG islands is strongly correlated to transcriptional gene silencing and epigenetic maintenance of the silenced state. As well as its role...
Wei Dai, Jens M. Teodoridis, Janet Graham, Constan...
CIKM
2005
Springer
14 years 8 days ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...