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BMCBI
2008
138views more  BMCBI 2008»
13 years 6 months ago
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
Background: The hierarchical clustering tree (HCT) with a dendrogram [1] and the singular value decomposition (SVD) with a dimension-reduced representative map [2] are popular met...
Yin-Jing Tien, Yun-Shien Lee, Han-Ming Wu, Chun-Ho...
BMCBI
2008
137views more  BMCBI 2008»
13 years 6 months ago
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data
Background: Non-sequence gene data (images, literature, etc.) can be found in many different public databases. Access to these data is mostly by text based methods using gene name...
Michael J. Gilchrist, Mikkel B. Christensen, Richa...
BMCBI
2006
127views more  BMCBI 2006»
13 years 6 months ago
Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions
Background: DNA microarrays, which have been increasingly used to monitor mRNA transcripts at a global level, can provide detailed insight into cellular processes involved in resp...
Tao Han, Cathy D. Melvin, Leming M. Shi, William S...
ICASSP
2009
IEEE
13 years 4 months ago
Probabilistic matrix tri-factorization
Nonnegative matrix tri-factorization (NMTF) is a 3-factor decomposition of a nonnegative data matrix, X USV , where factor matrices, U, S, and V , are restricted to be nonnegativ...
Jiho Yoo, Seungjin Choi
SIGSOFT
2007
ACM
14 years 7 months ago
Efficient token based clone detection with flexible tokenization
Code clones are similar code fragments that occur at multiple locations in a software system. Detection of code clones provides useful information for maintenance, reengineering, ...
Hamid Abdul Basit, Stan Jarzabek