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2009
ACM
14 years 4 months ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
CIKM
2004
Springer
14 years 1 months ago
Efficient processing of XML twig patterns with parent child edges: a look-ahead approach
With the growing importance of semi-structure data in information exchange, much research has been done to provide an effective mechanism to match a twig query in an XML database....
Jiaheng Lu, Ting Chen, Tok Wang Ling
PVLDB
2010
112views more  PVLDB 2010»
13 years 8 months ago
Two-way Replacement Selection
The performance of external sorting using merge sort is highly dependent on the length of the runs generated. One of the most commonly used run generation strategies is Replacemen...
Xavier Martinez-Palau, David Dominguez-Sal, Josep-...
ADC
2010
Springer
210views Database» more  ADC 2010»
13 years 4 months ago
Towards unifying advances in twig join algorithms
Twig joins are key building blocks in current XML indexing systems, and numerous algorithms and useful data structures have been introduced. We give a structured, qualitative anal...
Nils Grimsmo, Truls Amundsen Bjørklund
IEEEHPCS
2010
13 years 8 months ago
CuHMMer: A load-balanced CPU-GPU cooperative bioinformatics application
Abstract—GPUs have recently been used to accelerate dataparallel applications for they provide easier programmability and increased generality while maintaining the tremendous me...
Ping Yao, Hong An, Mu Xu, Gu Liu, Xiaoqiang Li, Ya...