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» Data parallelism in bioinformatics workflows using Hydra
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BMCBI
2006
126views more  BMCBI 2006»
13 years 7 months ago
JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow
Background: Expressed sequence tag (EST) analyses provide a rapid and economical means to identify candidate genes that may be involved in a particular biological process. These E...
Mariano Latorre, Herman Silva, Juan Saba, Carito G...
EGC
2005
Springer
14 years 1 months ago
OpenMolGRID: Using Automated Workflows in GRID Computing Environment
Quantitative Structure Activity/Property Relationship (QSAR/QSPR) model development is a complex and time-consuming procedure involving data gathering and preparation. It plays an ...
Sulev Sild, Uko Maran, Mathilde Romberg, Bernd Sch...
INTERNET
2007
105views more  INTERNET 2007»
13 years 7 months ago
Workflow Planning on a Grid
evel of abstraction, we can represent a workflow as a directed graph with operators (or tasks) at the vertices (see Figure 1). Each operator takes inputs from data sources or from ...
Craig W. Thompson, Wing Ning Li, Zhichun Xiao
BMCBI
2008
214views more  BMCBI 2008»
13 years 7 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
ISCAPDCS
2007
13 years 9 months ago
Architectural requirements of parallel computational biology applications with explicit instruction level parallelism
—The tremendous growth in the information culture, efficient digital searches are needed to extract and identify information from huge data. The notion that evolution in silicon ...
Naeem Zafar Azeemi