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» Data parallelism in bioinformatics workflows using Hydra
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APAQS
2001
IEEE
13 years 11 months ago
Object-Oriented Program Behavior Analysis Based on Control Patterns
Code-patterns are statically recurring structure specific to a programming language. It can be parallel to aid in designing software systems for solving particular problems. Contr...
C.-C. Hwang, S.-K. Huang, D.-J. Chen, D. Chen
DLOG
2010
13 years 5 months ago
TBox Classification in Parallel: Design and First Evaluation
Abstract. One of the most frequently used inference services of description logic reasoners classifies all named classes of OWL ontologies into a subsumption hierarchy. Due to emer...
Mina Aslani, Volker Haarslev
BIBE
2007
IEEE
208views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
The GPU on biomedical image processing for color and phenotype analysis
The computational power and memory bandwidth of graphics processing units (GPUs) have turned them into attractive platforms for general-purpose applications. In this paper, we expl...
Antonio Ruiz, Manuel Ujaldon, Jose Antonio Andrade...
IPPS
2009
IEEE
14 years 2 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
IPPS
2006
IEEE
14 years 1 months ago
Multiple sequence alignment by quantum genetic algorithm
In this paper we describe a new approach for the well known problem in bioinformatics: Multiple Sequence Alignment (MSA). MSA is fundamental task as it represents an essential pla...
L. Abdesslem, M. Soham, B. Mohamed