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» Data parallelism in bioinformatics workflows using Hydra
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HPDC
2010
IEEE
13 years 8 months ago
AzureBlast: a case study of developing science applications on the cloud
Cloud computing has emerged as a new approach to large scale computing and is attracting a lot of attention from the scientific and research computing communities. Despite its gro...
Wei Lu, Jared Jackson, Roger S. Barga
EUROPAR
2010
Springer
13 years 8 months ago
Thread Owned Block Cache: Managing Latency in Many-Core Architecture
Abstract. Shared last level cache is crucial to performance. However, multithread program model incurs serious contention in shared cache. In this paper, to reduce average cache ac...
Fenglong Song, Zhiyong Liu, Dongrui Fan, Hao Zhang...
BMCBI
2005
130views more  BMCBI 2005»
13 years 7 months ago
MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data
Background: The generation of large amounts of microarray data presents challenges for data collection, annotation, exchange and analysis. Although there are now widely accepted f...
Mahendra Navarange, Laurence Game, Derek Fowler, V...
BMCBI
2008
125views more  BMCBI 2008»
13 years 7 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
BMCBI
2008
115views more  BMCBI 2008»
13 years 7 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...