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SCFBM
2008
151views more  SCFBM 2008»
13 years 6 months ago
Wndchrm - an open source utility for biological image analysis
Background: Biological imaging is an emerging field, covering a wide range of applications in biological and clinical research. However, while machinery for automated experimentin...
Lior Shamir, Nikita Orlov, D. Mark Eckley, Tomasz ...
BMCBI
2011
13 years 1 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
BMCBI
2011
12 years 11 months ago
RAG: An Update to the RNA-As-Graphs Resource
Background: In 2004, we presented a web resource for stimulating the search for novel RNAs, RNA-As-Graphs (RAG), which classified, catalogued, and predicted RNA secondary structur...
Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly, Tam...
DSD
2011
IEEE
200views Hardware» more  DSD 2011»
12 years 7 months ago
Microthreading as a Novel Method for Close Coupling of Custom Hardware Accelerators to SVP Processors
Abstract—We present a new low-level interfacing scheme for connecting custom accelerators to processors that tolerates latencies that usually occur when accessing hardware accele...
Jaroslav Sykora, Leos Kafka, Martin Danek, Lukas K...
ICDCS
2011
IEEE
12 years 7 months ago
YSmart: Yet Another SQL-to-MapReduce Translator
— MapReduce has become an effective approach to big data analytics in large cluster systems, where SQL-like queries play important roles to interface between users and systems. H...
Rubao Lee, Tian Luo, Yin Huai, Fusheng Wang, Yongq...