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» Declarative Querying for Biological Sequences
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BMCBI
2005
108views more  BMCBI 2005»
13 years 7 months ago
Storing, linking, and mining microarray databases using SRS
Background: SRS (Sequence Retrieval System) has proven to be a valuable platform for storing, linking, and querying biological databases. Due to the availability of a broad range ...
Antoine Veldhoven, Don de Lange, Marcel Smid, Vict...
ISB
2002
140views more  ISB 2002»
13 years 7 months ago
Computer system "Gene Discovery" for promoter structure analysis
Data Mining and Knowledge Discovery techniques proved to be efficient tools for variety of complex tasks in biology including DNA research. This paper presents implementation of th...
Eugenii E. Vityaev, Yuri L. Orlov, Oleg V. Vishnev...
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
EDBT
2009
ACM
208views Database» more  EDBT 2009»
14 years 2 months ago
Flexible and efficient querying and ranking on hyperlinked data sources
There has been an explosion of hyperlinked data in many domains, e.g., the biological Web. Expressive query languages and effective ranking techniques are required to convert this...
Ramakrishna Varadarajan, Vagelis Hristidis, Louiqa...
DEXA
2009
Springer
188views Database» more  DEXA 2009»
13 years 11 months ago
On-the-Fly Integration and Ad Hoc Querying of Life Sciences Databases Using LifeDB
Data intensive applications in Life Sciences extensively use the Hidden Web as a platform for information sharing. Access to these heterogeneous Hidden Web resources is limited thr...
Anupam Bhattacharjee, Aminul Islam, Mohammad Shafk...