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» Declarative Querying for Biological Sequences
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ICDT
2003
ACM
150views Database» more  ICDT 2003»
14 years 28 days ago
Bioinformatics Adventures in Database Research
Informatics has helped launch molecular biology into the genomic era. It appears certain that informatics will remain a major contributor to molecular biology in the post-genome er...
Jinyan Li, See-Kiong Ng, Limsoon Wong
BMCBI
2010
121views more  BMCBI 2010»
13 years 7 months ago
Knowledge-based annotation of small molecule binding sites in proteins
Background: The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapi...
Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoema...
BMCBI
2005
109views more  BMCBI 2005»
13 years 7 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
DASFAA
2003
IEEE
108views Database» more  DASFAA 2003»
14 years 1 months ago
Spatial Query Processing for High Resolutions
Modern database applications including computeraided design (CAD), medical imaging, or molecular biology impose new requirements on spatial query processing. Particular problems a...
Hans-Peter Kriegel, Martin Pfeifle, Marco Pöt...
BALT
2006
13 years 11 months ago
Introducing Softness into Inductive Queries on String Databases
In many application domains (e.g., WWW mining, molecular biology), large string datasets are available and yet under-exploited. The inductive database framework assumes that both s...
Ieva Mitasiunaite, Jean-François Boulicaut