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» Declarative Querying for Biological Sequences
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BMCBI
2005
292views more  BMCBI 2005»
13 years 7 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
ISMB
1997
13 years 9 months ago
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
VLDB
1994
ACM
149views Database» more  VLDB 1994»
13 years 11 months ago
Qualified Answers That Reflect User Needs and Preferences
This paper introduces a formalism to describe the needs and preferences of database users. Because of the precise formulation of these concepts, we have found an automatic and ver...
Terry Gaasterland, Jorge Lobo
SIGMOD
2008
ACM
103views Database» more  SIGMOD 2008»
14 years 7 months ago
XArch: archiving scientific and reference data
Database archiving is important for the retrieval of old versions of a database and for temporal queries over the history of data. We demonstrate XArch, a management system for ma...
Heiko Müller, Ioannis Koltsidas, Peter Bunema...
BMCBI
2008
156views more  BMCBI 2008»
13 years 7 months ago
The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays
Background: Nucleic acid hybridization, a fundamental technique in molecular biology, can be modified into very effective and sensitive methods for detecting particular targets mi...
Shu-Hwa Chen, Chen-Zen Lo, Ming-Chi Tsai, Chao A. ...