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» Declarative Querying for Biological Sequences
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ML
2010
ACM
141views Machine Learning» more  ML 2010»
13 years 6 months ago
Relational retrieval using a combination of path-constrained random walks
Scientific literature with rich metadata can be represented as a labeled directed graph. This graph representation enables a number of scientific tasks such as ad hoc retrieval o...
Ni Lao, William W. Cohen
RECOMB
2008
Springer
14 years 8 months ago
Constructing Treatment Portfolios Using Affinity Propagation
A key problem of interest to biologists and medical researchers is the selection of a subset of queries or treatments that provide maximum utility for a population of targets. For ...
Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vla...
CIKM
2010
Springer
13 years 6 months ago
Fast and accurate estimation of shortest paths in large graphs
Computing shortest paths between two given nodes is a fundamental operation over graphs, but known to be nontrivial over large disk-resident instances of graph data. While a numbe...
Andrey Gubichev, Srikanta J. Bedathur, Stephan Seu...
BMCBI
2004
138views more  BMCBI 2004»
13 years 7 months ago
Constraint Logic Programming approach to protein structure prediction
Background: The protein structure prediction problem is one of the most challenging problems in biological sciences. Many approaches have been proposed using database information ...
Alessandro Dal Palù, Agostino Dovier, Feder...
CCS
2007
ACM
14 years 1 months ago
Privacy preserving error resilient dna searching through oblivious automata
Human Desoxyribo-Nucleic Acid (DNA) sequences offer a wealth of information that reveal, among others, predisposition to various diseases and paternity relations. The breadth and...
Juan Ramón Troncoso-Pastoriza, Stefan Katze...