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» Declarative Querying for Biological Sequences
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BMCBI
2006
144views more  BMCBI 2006»
13 years 7 months ago
ProFAT: a web-based tool for the functional annotation of protein sequences
Background: The functional annotation of proteins relies on published information concerning their close and remote homologues in sequence databases. Evidence for remote sequence ...
Charles Richard Bradshaw, Vineeth Surendranath, Bi...
DILS
2005
Springer
14 years 1 months ago
Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources
Abstract. We present INDUS (Intelligent Data Understanding System), a federated, query-centric system for knowledge acquisition from autonomous, distributed, semantically heterogen...
Doina Caragea, Jyotishman Pathak, Jie Bao, Adrian ...
SSDBM
2003
IEEE
83views Database» more  SSDBM 2003»
14 years 1 months ago
PiQA: An Algebra for Querying Protein Data Sets
Life science researchers frequently need to query large protein data sets in a variety of different ways. Protein data sets have a rich structure that includes its primary structu...
Sandeep Tata, Jignesh M. Patel
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
14 years 1 months ago
Indexing DNA Sequences Using q-Grams
We have observed in recent years a growing interest in similarity search on large collections of biological sequences. Contributing to the interest, this paper presents a method fo...
Xia Cao, Shuai Cheng Li, Anthony K. H. Tung
CIDR
2007
177views Algorithms» more  CIDR 2007»
13 years 9 months ago
bdbms - A Database Management System for Biological Data
Biologists are increasingly using databases for storing and managing their data. Biological databases typically consist of a mixture of raw data, metadata, sequences, annotations,...
Mohamed Y. Eltabakh, Mourad Ouzzani, Walid G. Aref