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» Declarative Querying for Biological Sequences
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DILS
2004
Springer
14 years 1 months ago
Links and Paths through Life Sciences Data Sources
An abundance of biological data sources contain data on classes of scientific entities, such as genes and sequences. Logical relationships between scientific objects are implemen...
Zoé Lacroix, Hyma Murthy, Felix Naumann, Lo...
NAR
2006
129views more  NAR 2006»
13 years 7 months ago
AliWABA: alignment on the web through an A-Bruijn approach
Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
Neil C. Jones, Degui Zhi, Benjamin J. Raphael
BMCBI
2005
123views more  BMCBI 2005»
13 years 7 months ago
PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
Background: Protein sequence alignments have become indispensable for virtually any evolutionary, structural or functional study involving proteins. Modern sequence search and com...
Mindaugas Margelevicius, Ceslovas Venclovas
SAC
2003
ACM
14 years 29 days ago
Similar_Join: Extending DBMS with a Bio-specific Operator
Existing sequence comparison software applications lack automation, abstraction, performance, and flexibility. Users need a new way of studying and applying sequence comparisons i...
Jake Yue Chen, John V. Carlis
DOOD
1995
Springer
128views Database» more  DOOD 1995»
13 years 11 months ago
Authorization Analysis of Queries in Object-Oriented Databases
Abstract. A simple model for method-based authorization is defined and an algorithm is presented for testing in compile-time whether a given database schema violates authorization...
Hiroyuki Seki, Yasunori Ishihara, Minoru Ito