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» Decomposing Gene Expression into Cellular Processes
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ICIP
2009
IEEE
14 years 11 months ago
A Bio-inspired Cnn With Re-indexing Engine For Lossless Dna Microarray Compression And Segmentation
The DNA microarray images allow to analyze the natural gene expressions. In this paper we propose an advanced method to efficiently address the imaging storage as well as the perf...
BIBM
2007
IEEE
126views Bioinformatics» more  BIBM 2007»
14 years 4 months ago
Microarray Image Denoising Using a Two-Stage Multiresolution Technique
DNA microarrays have demonstrated an excellent potential in correlating specific gene expression profiles to specific conditions. However, they are affected by inherent noise. ...
Hara Stefanou, Thanasis Margaritis, Dimitris Kafet...
NN
2007
Springer
267views Neural Networks» more  NN 2007»
13 years 9 months ago
Modeling of gene regulatory networks with hybrid differential evolution and particle swarm optimization
In the last decade, recurrent neural networks (RNNs) have attracted more efforts in inferring genetic regulatory networks (GRNs), using time series gene expression data from micro...
Rui Xu, Ganesh K. Venayagamoorthy, Donald C. Wunsc...
CIBCB
2006
IEEE
14 years 3 months ago
A Systematic Computational Approach for Transcription Factor Target Gene Prediction
— Computational prediction of transcription factor’s binding sites and regulatory target genes has great value to the biological studies of cellular process. Existing practices...
Ji He, Xinbin Dai, Xuechun Zhao
BMCBI
2010
178views more  BMCBI 2010»
13 years 10 months ago
An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
Background: Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs). They quantify similarity between proteins based o...
Shobhit Jain, Gary D. Bader